SubtiBank SubtiBank
abf2 [2019-01-04 15:52:22]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

abf2 [2019-01-04 15:52:22]

alpha-L-arabinofuranosidase
locus
BSU28510
pI
5.33
mw
56.34 kDa
protein length
495 aa Sequence Blast
gene length
1485 bp Sequence Blast
function
arabinan degradation
product
alpha-L-arabinofuranosidase
essential
no
ec
3.2.1.55
synonyms
xsa
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.6|Utilization of arabinan/ arabinose/ arabitol]

    • Gene

    Coordinates
    2,913,661 → 2,915,148

    The protein

    Catalyzed reaction/ biological activity

  • Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides (according to Swiss-Prot)

    • Protein family

  • glycosyl hydrolase 51 family (according to Swiss-Prot)

    • Structure

  • [PDB|2VRQ] (from Thermobacillus xylanilyticus, 66% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|1DF08A474E95909EAF68CF26D97DD49350ABEA89|abf2]
    description
    [Pubmed|14973026]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|14973026], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]: repression, [Pubmed|22900538], in [regulon|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA regulon]
  • [protein|A567466894AE9DE7CDE7816615433A37532297B5|AraR]: repression, [Pubmed|14973026], in [regulon|A567466894AE9DE7CDE7816615433A37532297B5|AraR regulon]

    • regulation

  • induced by arabinose ([protein|search|AraR]) [Pubmed|14973026]

    • additional information

  • A [protein|search|ncRNA] is predicted between '[protein|search|trxA]' and '[protein|search|abf2]' [PubMed|20525796]
    • view in new tab

    Biological materials

    Mutant

  • BKE28510 (Δ[gene|1DF08A474E95909EAF68CF26D97DD49350ABEA89|abf2]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE28510 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCCTCTGATCATTCCTT, downstream forward: _UP4_TAATCGCGCAAGAGCGCCGG
  • BKK28510 (Δ[gene|1DF08A474E95909EAF68CF26D97DD49350ABEA89|abf2]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK28510 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCCTCTGATCATTCCTT, downstream forward: _UP4_TAATCGCGCAAGAGCGCCGG

    • References

  • 14973026,18757805,20525796,22900538